#!/bin/bash
#SBATCH --job-name=undefined
#SBATCH --output=dirpath/std_err.txt
#SBATCH --ntasks=1
#SBATCH --time=30
#SBATCH --mem-per-cpu=12000
#SBATCH --workdir=dirpath/
#SBATCH --partition=express
#SBATCH --hint=memory_bound
#SBATCH --cpus-per-task=32
#SBATCH --mail-type=start,end,fail

## Prepare software environment by loading needed modules.  If running
## on a system besides the monsoon cluster at NAU, you should change
## the modules that load here to match what is available in your
## computing environment.  "module avail" should offer a list of
## modules that you can use.

module load qiime
module load usearch/6.1.544
module load itsx/1.0.10 
module load smalt/0.7.6
module load ea-utils/1.1.2-537
module load fastx_toolkit/0.0.14
module load hmmer/3.1b1
module load mafft/7.187
module load vsearch/1.1.3

## Run workflow script as saved.  Enter any commands you wish to run
## below here.


